2011 Publications

Azartash, K., Kwan, J., Paugh, J., Nguyen, A., Jester, J., and Gratton, E. (2011).
Pre-corneal tear film thickness in humans measured with a novel technique. Mol Vis 17, 756-767. PMID: 21527997. doi.
Bardwell, L. (2011).
Synthetic biology: Modulating the map kinase module. Curr Biol 21, R249-251. PMID: 21481758. doi.
Blaine, J., Lanzano, L., Giral, H., Caldas, Y., Levi, M., Gratton, E., Moldovan, R., and Lei, T. (2011).
Dynamic imaging of the sodium phosphate cotransporters. Adv Chronic Kidney Dis 18, 145-150. PMID: 21406299. doi.
Cardarelli, F., Lanzano, L., and Gratton, E. (2011).
Fluorescence correlation spectroscopy of intact nuclear pore complexes. Biophys J 101, L27-29. PMID: 21843462. doi.
Chen, B., Estrada, L., Hellriegel, C., and Gratton, E. (2011).
Nanometer-scale optical imaging of collagen fibers using gold nanoparticles. Biomed Opt Express 2, 511-519. PMID: 21412457. doi.
Choi, C., Zareno, J., Digman, M., Gratton, E., and Horwitz, A. (2011).
Cross-correlated fluctuation analysis reveals phosphorylation-regulated paxillin-fak complexes in nascent adhesions. Biophys J 100, 583-592. PMID: 21281572. doi.
Chou, C., Bardwell, L., Nie, Q., and Yi, T. (2011).
Noise filtering tradeoffs in spatial gradient sensing and cell polarization response. BMC Syst Biol 5, 196. PMID: 22166067. doi.
Crosignani, V., Dvornikov, A., and Gratton, E. (2011).
Enhancement of imaging depth in turbid media using a wide area detector. J Biophotonics 4, 592-599. PMID: 21425242. doi.
Digman, M., and Gratton, E. (2011).
Lessons in fluctuation correlation spectroscopy. Annu Rev Phys Chem 62, 645-668. PMID: 21219151. doi.
Estrada, L., and Gratton, E. (2011).
3d nanometer images of biological fibers by directed motion of gold nanoparticles. Nano Lett 11, 4656-4660. PMID: 21919444. doi.
Giral, H., Lanzano, L., Caldas, Y., Blaine, J., Verlander, J., Lei, T., Gratton, E., and Levi, M. (2011).
Role of pdzk1 protein in apical membrane expression of renal sodium-coupled phosphate transporters. J Biol Chem 286, 15032-15042. PMID: 21388960. doi.
Gokoffski, K., Wu, H., Beites, C., Kim, J., Kim, E., Matzuk, M., Johnson, J., Lander, A., and Calof, A. (2011).
Activin and gdf11 collaborate in feedback control of neuroepithelial stem cell proliferation and fate. Development 138, 4131-4142. PMID: 21852401. doi.
Hetherington, A., and Bardwell, L. (2011).
Plant signalling pathways: A comparative evolutionary overview. Curr Biol 21, R317-319. PMID: 21549953. doi.
Hinde, E., Cardarelli, F., Digman, M., Kershner, A., Kimble, J., and Gratton, E. (2011).
The impact of mitotic versus interphase chromatin architecture on the molecular flow of egfp by pair correlation analysis. Biophys J 100, 1829-1836. PMID: 21463597. doi.
Itano, M., Neumann, A., Liu, P., Zhang, F., Gratton, E., Parak, W., Thompson, N., and Jacobson, K. (2011).
Dc-sign and influenza hemagglutinin dynamics in plasma membrane microdomains are markedly different. Biophys J 100, 2662-2670. PMID: 21641311. doi.
Lander, A. (2011).
Pattern, growth, and control. Cell 144, 955-969. PMID: 21414486. doi.
Lander, A. (2011).
The individuality of stem cells. BMC Biol 9, 40. PMID: 21649941. doi.
Lander, A., Nie, Q., Vargas, B., and Wan, F. (2011).
Size-normalized robustness of dpp gradient in drosophila wing imaginal disc. J Mech Mater Struct 6, 321-350. PMID: 21841941. doi.
Lanzano, L., Digman, M., Fwu, P., Giral, H., Levi, M., and Gratton, E. (2011).
Nanometer-scale imaging by the modulation tracking method. J Biophotonics 4, 415-424. PMID: 21462350. doi.
Lei, J., Wan, F., Lander, A., and Nie, Q. (2011).
Robustness of signaling gradient in drosophila wing imaginal disc. Discrete Continuous Dyn Syst Ser B 16, 835-866. PMID: 24098092. doi.
Lim, R., Suhalim, J., Miyazaki-Anzai, S., Miyazaki, M., Levi, M., Potma, E., and Tromberg, B. (2011).
Identification of cholesterol crystals in plaques of atherosclerotic mice using hyperspectral cars imaging. J Lipid Res 52, 2177-2186. PMID: 21949051. doi.
Lu, Y., Su, C., Wang, A., and Liu, H. (2011).
Hyphal development in candida albicans requires two temporally linked changes in promoter chromatin for initiation and maintenance. PLoS Biol 9, e1001105. PMID: 21811397. doi.
Marchini, C., Pozzi, D., Montani, M., Alfonsi, C., Amici, A., CandeloroDeSanctis, S., Digman, M., Sanchez, S., Gratton, E., Amenitsch, H., et al. (2011).
Role of temperature-independent lipoplex-cell membrane interactions in the efficiency boost of multicomponent lipoplexes. Cancer Gene Ther 18, 543-552. PMID: 21394110. doi.
Nahmad, M., and Lander, A. (2011).
Spatiotemporal mechanisms of morphogen gradient interpretation. Curr Opin Genet Dev 21, 726-731. PMID: 22033220. doi.
Pham, K., Frieboes, H., Cristini, V., and Lowengrub, J. (2011).
Predictions of tumour morphological stability and evaluation against experimental observations. J R Soc Interface 8, 16-29. PMID: 20519213. doi.
Stafford, R., Hinde, E., Knight, M., Pennella, M., Ear, J., Digman, M., Gratton, E., and Bowie, J. (2011).
Tandem sam domain structure of human caskin1: A presynaptic, self-assembling scaffold for cask. Structure 19, 1826-1836. PMID: 22153505. doi.
Stevenson, J., and Liu, H. (2011).
Regulation of white and opaque cell-type formation in candida albicans by rtt109 and hst3. Mol Microbiol 81, 1078-1091. PMID: 21749487. doi.
Stringari, C., Cinquin, A., Cinquin, O., Digman, M., Donovan, P., and Gratton, E. (2011).
Phasor approach to fluorescence lifetime microscopy distinguishes different metabolic states of germ cells in a live tissue. Proc Natl Acad Sci U S A 108, 13582-13587. PMID: 21808026. doi.
Teigen, K., Song, P., Lowengrub, J., and Voigt, A. (2011).
A diffuse-interface method for two-phase flows with soluble surfactants. J Comput Phys 230, 375-393. PMID: 21218125. doi.
Vetri, V., Ossato, G., Militello, V., Digman, M., Leone, M., and Gratton, E. (2011).
Fluctuation methods to study protein aggregation in live cells: Concanavalin a oligomers formation. Biophys J 100, 774-783. PMID: 21281593. doi.
Wise, S., Lowengrub, J., and Cristini, V. (2011).
An adaptive multigrid algorithm for simulating solid tumor growth using mixture models. Math Comput Model 53, 1-20. PMID: 21076663. doi.
Zhao, S., Ovadia, J., Liu, X., Zhang, Y., and Nie, Q. (2011).
Operator splitting implicit integration factor methods for stiff reaction-diffusion-advection systems. J Comput Phys 230, 5996-6009. PMID: 21666863. doi.
Zheng, Z., Chou, C., Yi, T., and Nie, Q. (2011).
Mathematical analysis of steady-state solutions in compartment and continuum models of cell polarization. Math Biosci Eng 8, 1135-1168. PMID: 21936604. doi. 
2011 2011. Copyright © 2013. The Center for Complex Biological Systems, UC Irvine
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